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JOURNAL CLUB

JOURNAL CLUB

2019 Journal

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​2019

Date

Presenter

Title 

Journal

01 / 04

YU Lee

 Epigenetic silencing of ZNF132 mediated by methylation-sensitive Sp1 binding 

 promotes cancer progression in esophageal squamous cell carcinoma

 Cell Death Dis.

01 / 11

MJ Cho

 A conserved enhancer regulates Il9 expression in multiple lineages

 Nat. Commun.

01 / 18

JW Lee

 Cyclin A2/E1 activation defines a hepatocellular carcinoma subclass with a

 rearrangement signature of replication stress

 Nat. Commun.

01 / 25

DW Kim

 Aberrant enhancer hypomethylation contributes to hepatic carcinogenesis through

 global transcriptional reprogramming

 Nat. Commun.

02 / 08

EJ Choi

 A map of constrained coding regions in the human genome

 Nature Genet.

02 / 15

Khanh Chu

 Pan-cancer analysis of transcriptional metabolic dysregulation using The Cancer 

 Genome Atlas

 Nat. Commun.

03 / 04 

JH Hwang

 Sense-antisense lncRNA pair encoded by locus 6p22.3 determines neuroblastoma 

 susceptibility via the USP36-CHD7-SOX9 regulatory axis

 Cancer Cell

03 / 28

JY Lee

 Chromosome segregation errors generate a diverse spectrum of simple and 

 complex genomic rearrangements

 Nature Genet.

04 / 19

HR Shim

 Identification of differentially methylated cell types in epigenome-wide association

 studies

 Nat. Methods

 Bulk tissue cell type deconvolution with multi-subject single-cell expression reference

 Nat. Commun. 

04 / 26

HR Shim

 Direct RNA sequencing on nanopore arrays redefines the transcriptional complexity of

 a viral pathogen

 Nat. Commun.

05 / 03

HR Shim

 KRAS-IRF2 axis drives immune suppression and immune therapy resistance in

 colorectal cancer

 Cancer Cell 

05 / 10

HR Shim

 Somatic mutations increase hepatic clonal fitness and regeneration in chronic liver

 disease

 Cell

05 / 17

SC Kim

 Genomic and transcriptomic landscape of triple-negative breast cancers: subtypes

 and treatment strategies

 Cancer Cell

05 / 24

SC Kim

 Whole genome sequencing put forward hypotheses on metastasis evolution and

 therapy in colorectal cancer

 Nat. Commun.

06 / 21

JM Kim

 A biparatopic HER2-targeting antibody-drug conjugate induces tumor regression in

 in primary models refractory to or ineligible for HER2-targeted therapy

 Cancer Cell

06 / 28

JI Jun

 Defining UHRF1 domains that support maintenance of human colon cancer DNA 

 methylation and oncogenic properties

 Cancer Cell

07 / 05

YT Kim

 Quantitative evidence for early metastatic seeding in colorectal cancer

 Nature Genet.

07 / 12

JY Lee

 PI3Ka-regulated gelsolin activity is a critical determinant of cardiac cytoskeletal remodeling

 and heart disease

 Nat. Commun.

07 / 19

MJ Cho

 Developmental analysis of bone marrow neutrophils reveals populations specialized in 

 expansion, trafficking, and effector functions

 Immunity

07 / 26

YU Lee

 Antisense lncRNA transcription mediates DNA demethylation to drive stochastic 

 protocadherin a promoter choice

 Cell

08 / 02

JH Hwang

 Developmental dynamics of lncRNAs across mammalian organs and species

 Nature

08 / 16

JY Lee

 Characterizing the major structural variant alleles of the human genome

 Cell

08 / 30

MH Jung

 Integrative transcriptome imputation reveals tissue-specific and shared biological 

 mechanisms mediating susceptibility to complex traits

 Nat. Commun.

09 / 20

HR Shim

 Accurate detection of m6A RNA modifications in native RNA sequences

 Nat. Commun.

09 / 27

YT  Kim

 Transcriptionally active HERV-H retrotransposons demarcate topologically associating 

 domains in human pluripotent stem cells

 Nature Genet.

10 / 18

HJ Kim

 Synaptic proximity enables NMDAR signaling to promote brain metastasis

 Nature

10 / 25 

JM Kim

 Inflammasome activation leads to Caspase-1-dependent mitochondrial damage and block

 of mitophage

 Proc. Natl.

 Acad. Sci.

11 / 01

JM Kim

 Cell survival and cytokine release after inflammasome activation is regulated by the Toll-IL-

 1R protein SARM

 Immunity

11 / 08

JI Jun

 Whole-genome sequencing reveals novel tendem-duplication hotspots and a prognostic

 mutational signature in gastric cancer

 Nat. Commun.

11 / 15

SC Kim

 Comprehensive characterization of RAS mutations in colon and rectal cancers in old and 

 young patients

 Nat. Commun.

11 / 22

JY Lee

 Protein Kinase D at the Golgi controls NLRP3 inflammasome activation

 J. Exp. Med.

11 / 29

YU Lee

 Chromatin dysregulation and DNA methylation at transcription start sites associated with 

 transcriptional repression in cancers

 Nat. Commun.

12 / 05

MJ Cho

 Cleavage of RIPK1 by caspase-8 is crucial for limiting apoptosis and necroptosis

 Nature

12 / 13

EJ Choi

 Functional enhancers shape extrachromosomal oncogene amplifications

 Cell


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Cancer Genome Research Center(CGRC)

201B, Advanced Science and Technology Building
Yonsei University 50, Yonsei-ro, Seodaemun-gu,
Seoul, 03722 Republic of Korea

qufl104@yonsei.ac.kr
+82.2.2123.7699